From the Croatian side:
- MRRFEU as the National Coordination Unit (NCU), responsible for the overall implementation of the programme
- Ministry of Finance as Certifying Authority
- Service for Coordination of the System for combating irregularities and fraud in the use of European Union funds (AFCOS-service)
- The European Union Programme Implementation System Audit Agency (ARPA)
- Program managers, responsible for the preparation and implementation of the program
From the Swiss side:
- State Secretariat for Economic Affairs(State Secretariat for Economic Affairs – SECO) ),
- Swiss Agency for Development and Cooperation
- Swiss Contribution Office by the Embassy of Switzerland in Croatia
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